MetaPhlAn
MetaPhlAn is a
computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution.
With StrainPhlAn, it is possible to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species.
MetaPhlAn 3 is now available!
MetaPhlAn 3 is available in Bioconda and can be installed with Conda by running:MetaPhlAn 3.0 useful links
- The MetaPhlAn 3.0 GitHub repository
- The user manual is available here
- An exaustive tutorial is available in the BioBakery Wiki
- For user support, please go to the BioBakery forum
Bug reports should be submitted via the repository
issues tracking system.
For user support, consult the user manual
or ask a question in our user support group,
or contact directly the Segata lab.
MetaPhlAn 3.0 citation
If used MetaPhlAn 3.0 for your research, please consider citing the MetaPhlAn2 paper:
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
Nature Methods https://doi.org/10.1038/nmeth.3589
MetaPhlAn2
We advise to install it using Conda by running: